Yossi Farjoun 0e7e6d35d8 GATKBAMIndex calls buffer.length() on every read. This is causing much pain. ... Optimized by getting the read of the file upon opening the index-file and using that instead.		2013-04-29 12:49:02 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	GATKBAMIndex calls buffer.length() on every read. This is causing much pain.	2013-04-29 12:49:02 -04:00
test	Bugfix for ReadClipper with ReducedReads	2013-04-29 11:12:09 -04:00