hanna e7f5c93fe5 Cleaning up the inheritance hierarchy from the previous commit. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2738 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-29 19:13:36 +00:00
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AllLocusViewTest.java	Basic support for very simple index-driven locus traversals. Interface has been changed to	2010-01-29 03:14:26 +00:00
CoveredLocusViewTest.java	Basic support for very simple index-driven locus traversals. Interface has been changed to	2010-01-29 03:14:26 +00:00
LocusReferenceViewTest.java	Cleaning up the inheritance hierarchy from the previous commit.	2010-01-29 19:13:36 +00:00
LocusViewTemplate.java	Cleaning up the inheritance hierarchy from the previous commit.	2010-01-29 19:13:36 +00:00
ReadReferenceViewTest.java	When you get the reference string for a read that is mapped partially off the end of a contig, the string is masked with X's for base positions without corresponding reference positions.	2009-06-29 20:51:55 +00:00
ReferenceOrderedViewTest.java	Cleaning up the inheritance hierarchy from the previous commit.	2010-01-29 19:13:36 +00:00
ReferenceViewTemplate.java	Aaron: 1, GenomeLoc: 0. I changed our GenomeLoc class, seperating the creation of a genome loc (with the reference setup) to a parser class. GenomeLoc now just represents the actual genomic postion. The constructors are now package-protected (to enforce using the parser), but we may want to expose some constructors in the future.	2009-06-22 14:39:41 +00:00
ShardDataProviderTest.java	Changed dataSources to datasources, to be consistant with the rest of our package names. Also, this makes me champion in the largest check-in contest.	2009-06-11 18:13:22 +00:00