droazen 0e057276ae Changing the default behavior of the IndelRealigner to run without Smith-Waterman. Changed around the integration tests accordingly. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6039 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-22 22:53:58 +00:00
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net/sf	Did some refactoring which broke some unit tests, and then failed to run	2011-04-08 03:31:52 +00:00
org/broadinstitute/sting	Changing the default behavior of the IndelRealigner to run without Smith-Waterman. Changed around the integration tests accordingly.	2011-06-22 22:53:58 +00:00