hanna 0d890e1bf0 Rework Eric's output management code given that the behavior of the UG changes drastically ... depending on its output format. Current implementation is probably a bit overkill-ish and we can whittle this down to what's absolutely necessary. Writing VCFs to the 'out' protected printstream may not work at this moment. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2425 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-22 00:33:43 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Rework Eric's output management code given that the behavior of the UG changes drastically	2009-12-22 00:33:43 +00:00
test/org/broadinstitute/sting	VCF reader now creates the correct type of header line for each header type	2009-12-21 20:39:06 +00:00