Mauricio Carneiro 0d3ea0401c BQSR Parameter cleanup ... * get rid of 320C argument that nobody uses. * get rid of DEFAULT_READ_GROUP parameter and functionality (later to become an engine argument).		2012-02-07 14:42:11 -05:00
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R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	BQSR Parameter cleanup	2012-02-07 14:42:11 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Small script to chunk up a VCF into equal-sized chunks	2012-02-02 12:29:03 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00