gatk-3.8/protected/java
Eric Banks 0d282a7750 Bam writing from HaplotypeCaller seems to be working on all my test cases. Note that it's a hidden debugging option for now.
Please let me know if you notice any bad behavior with it.
2013-01-16 00:12:02 -05:00
..
src/org/broadinstitute/sting Bam writing from HaplotypeCaller seems to be working on all my test cases. Note that it's a hidden debugging option for now. 2013-01-16 00:12:02 -05:00
test/org/broadinstitute/sting 1. Initial implementation of bam writing for the HaplotypeCaller with -bam argument; currently only assembled haplotypes are emitted. 2013-01-15 10:19:18 -05:00