Mauricio Carneiro 0cd9438ac2 fixed soft unclipped calculation ... * getRefCoordSoftUnclippedEnd was not resetting the shift when hitting insertions. Fixed. * getReadCoordinateForReferenceCoordinateBeforeAlignmentEnd was returning the wrong read coordinate position. Fixed.		2011-08-30 02:45:29 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	fixed soft unclipped calculation	2011-08-30 02:45:29 -04:00
test	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00