Mauricio Carneiro 0cd9438ac2 fixed soft unclipped calculation ... * getRefCoordSoftUnclippedEnd was not resetting the shift when hitting insertions. Fixed. * getReadCoordinateForReferenceCoordinateBeforeAlignmentEnd was returning the wrong read coordinate position. Fixed.		2011-08-30 02:45:29 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	fixed soft unclipped calculation	2011-08-30 02:45:29 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Creating sample-bam list instead of joining	2011-08-22 18:03:39 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00