kshakir 0cce1ae8b2 When gathering VCFs, using CombineVariants from the current classpath, and not the GATK used to run the command. This was a concern for external modules that bundled the engine but not CombineVariants.		2012-10-23 12:44:06 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	Added explicit @ClassType annotations to @Argument for Option[Int] or Option[Double] since scala seems to change the reflected type to Option[Object] on some systems.	2012-10-19 13:20:29 -04:00
src/org/broadinstitute/sting/queue	When gathering VCFs, using CombineVariants from the current classpath, and not the GATK used to run the command. This was a concern for external modules that bundled the engine but not CombineVariants.	2012-10-23 12:44:06 -04:00
test/org/broadinstitute/sting/queue	Update DataProcessingPipelineTest MD5s	2012-09-24 15:38:07 -04:00