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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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Mauricio Carneiro 4cd1a92358 Updating RR integration tests 
Forgot to update the integration tests after merging DEV-117 with optimizations from GATK main repo.
 		2012-10-23 11:26:26 -04:00
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bqsr updating BQSR integration tests 2012-09-19 14:10:34 -04:00
compression/reducereads Updating RR integration tests 2012-10-23 11:26:26 -04:00
genotyper MaxAltAlleles now defaults to 6, no more MaxAltAllelesForIndels 2012-10-22 13:47:56 -04:00
haplotypecaller MaxAltAlleles now defaults to 6, no more MaxAltAllelesForIndels 2012-10-22 13:47:56 -04:00