ebanks 0cc6d0fbbb One more quick memory improvement: reuse Alleles in a given context instead of creating new ones for each sample (duh). ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3147 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-09 18:48:36 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	One more quick memory improvement: reuse Alleles in a given context instead of creating new ones for each sample (duh).	2010-04-09 18:48:36 +00:00
test/org/broadinstitute/sting	Variant Quality Score modules in VariantEval2 no longer create huge lists which hold all of the quality scores encountered and instead cast the quality score to an integer and use hash tables. Bug fix for files in which all the quality scores are set to -1.	2010-04-09 18:36:06 +00:00