aaron 0cc634ed5d -Renamed rodVariants to RodGeliText ... -Remove KGenomesSNPROD -Remove rodFLT -Renamed rodGFF to RodGenotypeChipAsGFF -Fixed a problem in SSGenotypeCall -Added basic SSGenotype Test class -Make VCFHeader constructors public git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1536 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-04 18:40:43 +00:00
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bwa	Checkpoint. The BWT that we generate now matches the first 16% of the BWT that BWT-SW generates. Cleaned up output streams to separate the byte packing / word packing from the data structure generation.	2009-09-02 22:18:17 +00:00
gatk	-Renamed rodVariants to RodGeliText	2009-09-04 18:40:43 +00:00
playground	-Renamed rodVariants to RodGeliText	2009-09-04 18:40:43 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	-Renamed rodVariants to RodGeliText	2009-09-04 18:40:43 +00:00