ebanks 0c95d6906f Merge both versions of the Sequenom assay design maker: use Jared's base code and add in indels. [Jared, this still emits the same output for SNPs as your original version) ... Remove all sequenom stuff from the FastaAlternateReferenceMaker so it can just concentrate on making alternate references... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1831 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-14 17:11:45 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Merge both versions of the Sequenom assay design maker: use Jared's base code and add in indels. [Jared, this still emits the same output for SNPs as your original version)	2009-10-14 17:11:45 +00:00
test/org/broadinstitute/sting	Explicitly set output to GELI now that default is VCF	2009-10-13 22:12:03 +00:00