Eric Banks 62cee2fb5b Feature request from Tim that could be useful to all: there's now an --interval_padding argument that specifies how many basepairs to add to each of the intervals provided with -L (on both ends). This is particularly useful when trying to run over the exome plus flanks and don't want to have to pre-compute the flanks (just use e.g. --interval_padding 50). Added integration test to cover this feature.		2012-06-18 21:36:27 -04:00
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IntervalIntegrationTest.java	Feature request from Tim that could be useful to all: there's now an --interval_padding argument that specifies how many basepairs to add to each of the intervals provided with -L (on both ends). This is particularly useful when trying to run over the exome plus flanks and don't want to have to pre-compute the flanks (just use e.g. --interval_padding 50). Added integration test to cover this feature.	2012-06-18 21:36:27 -04:00
IntervalUtilsUnitTest.java	GATK tests use public/testdata not /humgen/ as much as possible	2012-05-24 10:58:58 -04:00