Mark DePristo 0c4e729e13 Working version of adaptive context calculations ... -- Uses chi2 test for independences to determine if subcontext is worth representing. Give excellent visual results -- Writes out analysis output file producing excellent results in R -- Trivial reformatting of MathUtils		2012-07-31 08:11:04 -04:00
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R	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Working version of adaptive context calculations	2012-07-31 08:11:04 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Renaming BQSR to BaseRecalibrator	2012-07-23 10:17:17 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00