gatk3的最后一个经典版本3.8

Mark DePristo 0c4e729e13 Working version of adaptive context calculations ... -- Uses chi2 test for independences to determine if subcontext is worth representing. Give excellent visual results -- Writes out analysis output file producing excellent results in R -- Trivial reformatting of MathUtils		2012-07-31 08:11:04 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Cleanup BQSR classes	2012-07-31 08:11:03 -04:00
public	Working version of adaptive context calculations	2012-07-31 08:11:04 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	V1 of tool to visualize the quality score information in the context covariates	2012-07-31 08:11:02 -04:00