gatk3的最后一个经典版本3.8

Eric Banks 0c34e47a87 Merge pull request #50 from broadinstitute/gg_new_ReassignOneMappingQualityFilter_GSATDG-77 ... New ReadFilter allows users to reassign a specific mapping quality...		2013-02-20 04:51:45 -08:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Merge pull request #47 from broadinstitute/aw_reduceread_perf_1_GSA-761	2013-02-20 04:49:07 -08:00
public	Added new ReadFilter that allows users to specifically reassign one single mapping quality to a different value. Useful for TopHat and other RNA-seq software users.	2013-02-20 01:24:45 -05:00
settings	Added GATKDocs fct to indicate default Read Filters for each tool	2013-02-19 16:12:29 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00