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gatk-3.8/protected/java/test/org/broadinstitute/sting/utils/recalibration
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David Roazen a536e1da84 Move some VCF/VariantContext methods back to the GATK based on feedback 
-Moved some of the more specialized / complex VariantContext and VCF utility
 methods back to the GATK.

-Due to this re-shuffling, was able to return things like the Pair class back
 to the GATK as well.
 		2013-01-29 16:56:55 -05:00
..
ContextCovariateUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
CycleCovariateUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
QualQuantizerUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ReadCovariatesUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ReadGroupCovariateUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalDatumUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalUtilsUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalibrationReportUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalibrationTablesUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalibrationTestUtils.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RepeatCovariatesUnitTest.java Move some VCF/VariantContext methods back to the GATK based on feedback 2013-01-29 16:56:55 -05:00