Mark DePristo 0bd2a872fa Done GSA-282: Unindexed traversals crash if a read goes off the end of a contig ... -- Already fixed in the codebase. Added unindexed bam and integration tests to ensure this is fine going forward.		2012-09-05 21:10:03 -04:00
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R	Actually load the library necessary to compactPDF	2012-08-28 08:06:47 -04:00
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java	Done GSA-282: Unindexed traversals crash if a read goes off the end of a contig	2012-09-05 21:10:03 -04:00
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packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Update from dbsnp135 to dbsnp137.	2012-08-31 14:06:29 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00