hanna 0bb6b9a91a Locus iterators were implemented in a peekable style, which meant that a locus ... and its three or four nearest neighbors could be in memory at once. Tweaking the iterators to ensure that previous AlignmentContexts don't have strong references which means that the garbage collector can work effectively to help us trundle through these regions. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5820 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-18 21:40:40 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Locus iterators were implemented in a peekable style, which meant that a locus	2011-05-18 21:40:40 +00:00
test	Cleanup GATKBAMIndex unit test to allow a more efficient access pattern for	2011-05-12 21:50:33 +00:00