rpoplin 0b56003d1a Remove stray commented out line ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3832 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-19 19:14:39 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Remove stray commented out line	2010-07-19 19:14:39 +00:00
test	Solid processing in base quality recalibrator now has several options for how to handle no calls in the color space. --ignore_nocall_colorspace is removed and replace by --solid_nocall_strategy. Fixed some of the @Deprecated tags in BaseUtils. LocusWalkers now filter out FailsVendorQualityCheck reads. HLA caller integration test bam file had bad vendor reads so its integration test changed.	2010-07-19 19:10:29 +00:00