Mark DePristo 0b29d54937 Changed most BAMSchedule ReviewedStingExceptions to UserExceptions ... -- As these represent the bulk of the StingExceptions coming from BAMSchedule and are caused by simple problems like the user providing bad input tmp directories, etc.		2012-02-27 17:08:41 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Changed most BAMSchedule ReviewedStingExceptions to UserExceptions	2012-02-27 17:08:41 -05:00
test	Fix serious engine bug that could cause reads to be dropped under certain circumstances	2012-02-13 16:25:21 -05:00