Mark DePristo 0b29d54937 Changed most BAMSchedule ReviewedStingExceptions to UserExceptions ... -- As these represent the bulk of the StingExceptions coming from BAMSchedule and are caused by simple problems like the user providing bad input tmp directories, etc.		2012-02-27 17:08:41 -05:00
..
R	Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R	2011-12-19 10:08:38 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Changed most BAMSchedule ReviewedStingExceptions to UserExceptions	2012-02-27 17:08:41 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	When an interval list specifies overlapping intervals merge them before scattering.	2012-02-08 02:12:16 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00