gatk3的最后一个经典版本3.8

Mark DePristo 0ac4352614 LIBS can now (optionally) track the unique reads it uses from the underlying read iterator ... -- This capability is essential to provide an ordered set of used reads to downstream users of LIBS, such as ART, who want an efficient way to get the reads used in LIBS -- Vastly expanded the multi-read, multi-sample LIBS unit tests to make sure this capability is working -- Added createReadStream to ArtificialSAMUtils that makes it relatively easy to create multi-read, multi-sample read streams for testing		2013-01-11 15:17:16 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	Merged bug fix from Stable into Unstable	2013-01-11 11:05:27 -05:00
public	LIBS can now (optionally) track the unique reads it uses from the underlying read iterator	2013-01-11 15:17:16 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating to latest google caliper code	2013-01-11 15:17:16 -05:00