sathibault 0a8f75b953 Merge branch 'master' into st_fpga_hmm ... Conflicts: protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCaller.java		2013-07-15 08:17:32 -05:00
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java	Merge branch 'master' into st_fpga_hmm	2013-07-15 08:17:32 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00