kshakir f93b279151 Moved the class field caching from QScript to a ClassFieldCache utility. ... Using ClassFieldCache to pull values from QScript for passing to done() method of QStatusMessenger.		2012-10-16 18:49:31 -04:00
..
cancer	upgraded mutation caller with VCF output	2012-10-15 13:49:08 -04:00
gatk	Moved the class field caching from QScript to a ClassFieldCache utility.	2012-10-16 18:49:31 -04:00
picard	Resolve [DEV-7]: add single-sample VCF calling at end of FASTQ-BAM pipeline. Initial steps of [DEV-4]: queue extensions for Picard QC metrics	2012-10-15 13:49:08 -04:00
samtools	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
snpeff	Be explicit about setting the snpEff -onlyCoding option in the pipeline	2012-01-17 20:04:27 -05:00