Valentin Ruano-Rubio 09ac3779d6 Added ReadLikelihoods component to substitute Map<String,PerReadAlleleLikelihoodMap>. ... It uses a more efficient java array[] based implementation and encapsulates operations perform with such a read-likelihood collection such as marginalization, filtering by position, poor modeling or capping worst likelihoods and so forth. Stories: https://www.pivotaltracker.com/story/show/70222086 https://www.pivotaltracker.com/story/show/67961652		2014-08-11 17:46:28 -04:00
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src	Added ReadLikelihoods component to substitute Map<String,PerReadAlleleLikelihoodMap>.	2014-08-11 17:46:28 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00