gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 09ac3779d6 Added ReadLikelihoods component to substitute Map<String,PerReadAlleleLikelihoodMap>. It uses a more efficient java array[] based implementation and encapsulates operations perform with such a read-likelihood collection such as marginalization, filtering by position, poor modeling or capping worst likelihoods and so forth. Stories: https://www.pivotaltracker.com/story/show/70222086 https://www.pivotaltracker.com/story/show/67961652		2014-08-11 17:46:28 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #622 from broadinstitute/ldg_SORanalysis	2014-08-11 09:45:27 -04:00
public	Added ReadLikelihoods component to substitute Map<String,PerReadAlleleLikelihoodMap>.	2014-08-11 17:46:28 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/