gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 09ac3779d6 Added ReadLikelihoods component to substitute Map<String,PerReadAlleleLikelihoodMap>. It uses a more efficient java array[] based implementation and encapsulates operations perform with such a read-likelihood collection such as marginalization, filtering by position, poor modeling or capping worst likelihoods and so forth. Stories: https://www.pivotaltracker.com/story/show/70222086 https://www.pivotaltracker.com/story/show/67961652		2014-08-11 17:46:28 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #622 from broadinstitute/ldg_SORanalysis	2014-08-11 09:45:27 -04:00
public	Added ReadLikelihoods component to substitute Map<String,PerReadAlleleLikelihoodMap>.	2014-08-11 17:46:28 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	…
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

The Genome Analysis Toolkit