Mark DePristo 097ed4ecc4 Memory usage optimizations and safety improvements to StratNode and StratificationManager ... -- Added memory and safety optimizations to StratNode and StratificationManager. Fresh, immutable Hashmaps are allocated for final data structures, so they exactly the correct size and cannot be changed by users. -- Added ability of a stratification to specify incompatible evaluation. The two strats using this are AC and Sample with VariantSummary, as this computes per-sample averages and so combining these results in an O(n^2) memory requirement. Added integration test to cover incompatible strats and evals		2012-03-30 15:31:55 -04:00
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net/sf	Fix serious engine bug that could cause reads to be dropped under certain circumstances	2012-02-13 16:25:21 -05:00
org/broadinstitute/sting	Memory usage optimizations and safety improvements to StratNode and StratificationManager	2012-03-30 15:31:55 -04:00