Mark DePristo 1200848bbf Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers ... -- Deleted ReadMetaDataTracker -- Added function to ReadShard to give us the span from the left most position of the reads in the shard to the right most, which is needed for the new view		2012-08-30 10:15:10 -04:00
..
bwa	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
reference	Killing off some FindBugs 'Realiability' issues	2012-08-16 14:00:48 -04:00
Aligner.java	Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-07-19 20:25:33 -04:00
Alignment.java	Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-07-19 20:25:33 -04:00
AlignmentValidation.java	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
package-info.java	BWA bindings and tests moved to public (was required for ValidationAmplicons)	2011-07-19 20:11:31 -04:00