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gatk-3.8/public/gatk-utils/src/test/resources
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Phillip Dexheimer 3354c07b1c Added optional element "includeUnmapped" to the PartitionBy annotation 
* The value of this element (default true) determines whether Queue will explicitly run this walker over unmapped reads
 * This patch fixes a runtime error when FindCoveredIntervals was used with Queue
 * PT 81777160
 		2015-01-31 15:47:57 -05:00
..
exampleBAM.bam Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleBAM.bam.bai Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleBAM.simple.bai Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleBAM.simple.bam Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleBAM_with_unmapped.bai Added optional element "includeUnmapped" to the PartitionBy annotation 2015-01-31 15:47:57 -05:00
exampleBAM_with_unmapped.bam Added optional element "includeUnmapped" to the PartitionBy annotation 2015-01-31 15:47:57 -05:00
exampleCRAM-noindex.cram Added introductory CRAM support. 2015-01-26 14:47:39 -03:00
exampleCRAM.cram Added introductory CRAM support. 2015-01-26 14:47:39 -03:00
exampleCRAM.cram.bai Added introductory CRAM support. 2015-01-26 14:47:39 -03:00
exampleCRAM.cram.crai Added introductory CRAM support. 2015-01-26 14:47:39 -03:00
exampleDBSNP.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleDBSNP.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA-3contigs.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA-combined.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA-windows.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.dict Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.amb Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.ann Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.bwt Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.fai Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.pac Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.rbwt Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.rpac Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.rsa Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.sa Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGATKReport.eval Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGATKReportv1.tbl Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGATKReportv2.tbl Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGRP.grp Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleINTERVAL.intervals Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleNORG.bam Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleNORG.bam.bai Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forAlleleFractionSimulation.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forAlleleFractionSimulation.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forLongInsert.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forLongInsert.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forSimulation.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forSimulation.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
testProperties.properties Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
testfile.sam Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00