Mark DePristo 09595cdeb9 Remove ExactPairHMM and OriginalPairHMM, everyone just uses Log10PairHMM with appropriate arguments		2013-02-09 13:06:54 -05:00
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genotyper	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
pairhmm	Remove ExactPairHMM and OriginalPairHMM, everyone just uses Log10PairHMM with appropriate arguments	2013-02-09 13:06:54 -05:00
recalibration	Swap java Random generator for GATK one to ensure test determinism	2013-02-04 10:57:34 -05:00
ContigComparatorUnitTest.java	Generalize and fixup ContigComparator	2013-02-09 09:52:13 -05:00