Ryan Poplin 094db7bf24 We now require at least 10 samples to merge variants into complex events in the HC. Added a new population based bam for the complex event integration test.		2012-10-24 14:07:36 -04:00
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bqsr	updating BQSR integration tests	2012-09-19 14:10:34 -04:00
compression/reducereads	Refactored the BaseCounts classes so that they are safer and allow for calculations on the most probable base (which is not necessarily the most common base).	2012-10-04 10:37:11 -04:00
genotyper	MaxAltAlleles now defaults to 6, no more MaxAltAllelesForIndels	2012-10-22 13:47:56 -04:00
haplotypecaller	We now require at least 10 samples to merge variants into complex events in the HC. Added a new population based bam for the complex event integration test.	2012-10-24 14:07:36 -04:00