gatk3的最后一个经典版本3.8

Mark DePristo 0921c3096c -- Disable genotype filtering since it doesn't work ... -- Update code to name new, more general decodeSingleValue -- Update MISSING_VALUE constants to be 0xFFFFFF80 vs. 0x00000080 as these are equivalent for a byte and handle the two complement cast from byte to int -- Fix decoding of byte and short values which were screwing up missing values -- Code cleanup in decoder -- Generalize bestIntegerType function -- Handle the encoding of boolean FLAG fields -- Test the encoding of vectors of values		2012-05-24 10:56:56 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	BCF2 encoder / decoder implement new site / genotype block organization	2012-05-24 10:56:55 -04:00
settings	Rev. tribble to v101 with another putative open file leak fix	2012-05-04 15:40:41 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	build system overhaul	2012-05-17 15:16:29 -04:00
ivy.xml	Not Nexus. Need new name. Navel?	2012-05-24 10:11:58 -04:00