gatk3的最后一个经典版本3.8

Roger Zurawicki 091c7197cd Fixed memory leak and bug with deletions in clipping ... The ClippingOp clip cigar function would run into a endless loop if the parameter were out of the reads range, I stopped the bug. * There is no check to make sure the read coordinate are covered by the read though When Hard clipping to interval, I added a check for deletions. NOTE: method works for NA12878 WEx but needs to be more thoroughly tested/optimized		2011-09-18 19:21:51 -04:00
public	Fixed memory leak and bug with deletions in clipping	2011-09-18 19:21:51 -04:00
settings	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Enable conditional inclusion of documentation for hidden features in GATKDocs.	2011-08-27 03:38:01 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00