Chris Hartl e1d09ab0db QD is now divided by the average length of the alternate allele (weighted by the allele count). The average length is stored in a related annotation, "AAL", which can be used to re-compute the "old" QD by simple multiplication. Integration tests *should* all pass.		2013-01-02 14:41:29 -05:00
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bqsr	Added functionality of outputting sorted GATKReport Tables	2012-12-20 14:02:21 -05:00
compression/reducereads	RR bug fix: we were failing when a read started with an insertion just at the edge of the consensus region.	2012-12-19 10:59:07 -05:00
genotyper	QD is now divided by the average length of the alternate allele (weighted by the allele count). The average length is stored in a related annotation, "AAL", which can be used to re-compute the "old" QD by simple multiplication. Integration tests *should* all pass.	2013-01-02 14:41:29 -05:00
haplotypecaller	QD is now divided by the average length of the alternate allele (weighted by the allele count). The average length is stored in a related annotation, "AAL", which can be used to re-compute the "old" QD by simple multiplication. Integration tests *should* all pass.	2013-01-02 14:41:29 -05:00