gatk-3.8/public/java
Roger Zurawicki 091c7197cd Fixed memory leak and bug with deletions in clipping
The ClippingOp clip cigar function would run into a endless loop if the parameter were out of the reads range, I stopped the bug.
* There is no check to make sure the read coordinate are covered by the read though
When Hard clipping to interval, I added a check for deletions.
NOTE: method works for NA12878 WEx but needs to be more thoroughly tested/optimized
2011-09-18 19:21:51 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Fixed memory leak and bug with deletions in clipping 2011-09-18 19:21:51 -04:00
test Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly. 2011-09-06 20:39:42 -04:00