aaron 08fddd43af -Replaced adaptive and linear strategies with an adaptive linear strategy ... -Added the exponential growth strategy -Added factory code that allows you to transitition between strategies, so if you want to move from linear to exp at a point, and then back when you've hit a runtime threshold, it will take care of it for you. -Changed the code to return a Shard instead of a GenomeLoc git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@313 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-07 19:37:38 +00:00
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gatk	-Replaced adaptive and linear strategies with an adaptive linear strategy	2009-04-07 19:37:38 +00:00
playground	Math correction.	2009-04-07 02:18:13 +00:00
utils	Another check to deal with bad reads (BWA output throws bad exceptions)	2009-04-06 04:58:22 +00:00
StingException.java	We need a base exception so we can differentiate between exceptions we've generated and those external to our code. All our exceptions should extend this exception. I'll migrate the ones I can find later on.	2009-04-07 00:13:45 +00:00