Eric Banks 6a903f2c23 I finally gave up on trying to get the Haplotype/Allele merging to work in the HaplotypeCaller. ... I've resigned myself instead to create a mapping from Allele to Haplotype. It's cheap so not a big deal, but really shouldn't be necessary. Ryan and I are talking about refactoring for GATK2.5.		2013-01-18 01:21:08 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	I finally gave up on trying to get the Haplotype/Allele merging to work in the HaplotypeCaller.	2013-01-18 01:21:08 -05:00
test	Add tests to ensure that all insertion reads appear in the active region traversal	2013-01-16 16:25:36 -05:00