gatk-3.8/playground/java/src/org/broadinstitute/sting
asivache 08ca2ce89b fixing accidental incomplete commit
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@151 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-23 14:39:15 +00:00
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gatk Now works on single samples and computes metrics. 2009-03-22 15:45:12 +00:00
illumina Added a directory to house some Illumina output parsers. Hopefully this will be merged back into Picard at some point. 2009-03-21 17:55:56 +00:00
indels fixing accidental incomplete commit 2009-03-23 14:39:15 +00:00
projects/fourbasecaller Java version of basecaller that estimates probability distribution over four-base hypothesis space via an internal-control-initialized Gaussian mixture model over base channel intensities. 2009-03-21 17:58:50 +00:00
utils Moved to core 2009-03-22 20:02:19 +00:00
ValidateSAM.java optionally check that the records are sorted. 2009-03-22 15:36:24 +00:00