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gatk-3.8/public/gatk-utils/src/test/resources
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Ron Levine 08a9c80559 Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
..
exampleBAM.bam Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleBAM.bam.bai Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleBAM.simple.bai Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
exampleBAM.simple.bam Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
exampleBAM_with_unmapped.bai Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
exampleBAM_with_unmapped.bam Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
exampleCRAM-nobai-nocrai.cram Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleCRAM-nobai-withcrai.cram Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleCRAM-nobai-withcrai.cram.crai Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleCRAM.cram Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleCRAM.cram.bai Switched to using CRAM's SamReader.Indexing implementation. 2015-08-11 17:52:49 -03:00
exampleCRAM.cram.crai Validate VCF with sequence dictionary 2015-11-20 09:23:24 -05:00
exampleDBSNP.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleDBSNP.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA-3contigs.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA-combined.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA-windows.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.dict Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.amb Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.ann Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.bwt Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.fai Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.pac Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.rbwt Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.rpac Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.rsa Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleFASTA.fasta.sa Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGATKReport.eval Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGATKReportv1.tbl Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGATKReportv2.tbl Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleGRP.grp Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleINTERVAL.intervals Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
exampleNORG.bam Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
exampleNORG.bam.bai Make the header sequence dictionary match reference 2015-11-21 19:12:37 -05:00
forAlleleFractionSimulation.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forAlleleFractionSimulation.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forLongInsert.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forLongInsert.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forSimulation.vcf Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
forSimulation.vcf.idx Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
testProperties.properties Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00
testfile.sam Split all imports of tools|engine from utils, and all tools from engine. 2014-10-24 20:59:45 +08:00