Mark DePristo 0892f2b8b2 Closing GSA-287:LocusReferenceView doesn't do very well in the case where contigs land off the end of the reference ... -- Confirmed that reads spanning off the end of the chromosome don't cause an exception by adding integration test for a single read that starts 7 bases from the end of chromosome 1 and spans 90 bases or so off. Added pileup integration test to ensure this behavior continues to work		2012-09-03 20:18:56 -04:00
..
net/sf	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
org/broadinstitute/sting	Closing GSA-287:LocusReferenceView doesn't do very well in the case where contigs land off the end of the reference	2012-09-03 20:18:56 -04:00