gatk3的最后一个经典版本3.8

Mark DePristo 0892f2b8b2 Closing GSA-287:LocusReferenceView doesn't do very well in the case where contigs land off the end of the reference ... -- Confirmed that reads spanning off the end of the chromosome don't cause an exception by adding integration test for a single read that starts 7 bases from the end of chromosome 1 and spans 90 bases or so off. Added pileup integration test to ensure this behavior continues to work		2012-09-03 20:18:56 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Updating BQSR tests due to my change to reset BQSR calibration data	2012-08-31 19:51:09 -04:00
public	Closing GSA-287:LocusReferenceView doesn't do very well in the case where contigs land off the end of the reference	2012-09-03 20:18:56 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00