Ron Levine 08790e1dab Fix mmultiallelic info field annotation for VariantAnnotator ... Add multi-allele test for info field annotations Fix to process all types of INFO annotations roll back to previous version, removes INFO and FORMAT Correct @return for VariantAnnotatorEngine.getNonReferenceAlleles() Enhance comments and clean up multi-allelic logic, handle header info number = R only parse counts of A & R Add INFO for AC update MD5 Performance enhancement, only parse multiallelic with a count A or R Make argument final in getNonReferenceAlleles() Code cleanup, add exceptions for bad expression/allele size mismatch and missing header info for an expression Change exception to warning for expression value/number of alleles check remove adevertised exceptions		2014-12-17 22:21:00 -05:00
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src	Fix mmultiallelic info field annotation for VariantAnnotator	2014-12-17 22:21:00 -05:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00