gatk3的最后一个经典版本3.8

Go to file

Ron Levine 08790e1dab Fix mmultiallelic info field annotation for VariantAnnotator Add multi-allele test for info field annotations Fix to process all types of INFO annotations roll back to previous version, removes INFO and FORMAT Correct @return for VariantAnnotatorEngine.getNonReferenceAlleles() Enhance comments and clean up multi-allelic logic, handle header info number = R only parse counts of A & R Add INFO for AC update MD5 Performance enhancement, only parse multiallelic with a count A or R Make argument final in getNonReferenceAlleles() Code cleanup, add exceptions for bad expression/allele size mismatch and missing header info for an expression Change exception to warning for expression value/number of alleles check remove adevertised exceptions		2014-12-17 22:21:00 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Fix mmultiallelic info field annotation for VariantAnnotator	2014-12-17 22:21:00 -05:00
public	Fix mmultiallelic info field annotation for VariantAnnotator	2014-12-17 22:21:00 -05:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/