David Roazen 42d771f748 Remove org.apache.commons.collections.IteratorUtils dependency from the test suite ... -This was a dependency of the test suite, but not the GATK proper, which caused problems when running the test suite on the packaged GATK jar at release time -Use GATKVCFUtils.readVCF() instead		2013-08-21 19:44:02 -04:00
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AlignmentUtilsUnitTest.java	Reworking of the dangling tails merging code.	2013-06-11 12:53:04 -04:00
ArtificialBAMBuilderUnitTest.java	Remove org.apache.commons.collections.IteratorUtils dependency from the test suite	2013-08-21 19:44:02 -04:00
ArtificialPatternedSAMIteratorUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSAMFileWriterUnitTest.java	PrintReads writes a header when used with -BQSR	2013-02-14 22:19:14 -05:00
ArtificialSAMQueryIteratorUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSAMUtilsUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSingleSampleReadStreamUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
GATKSAMRecordUnitTest.java	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
MisencodedBaseQualityUnitTest.java	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00
ReadUtilsUnitTest.java	Critical bugfix for adapter clipping in HaplotypeCaller	2013-07-02 15:46:36 -04:00