Michael McCowan c3a933ce84 Adaptations to accomodate Tribble API changes, comprising mostly of the following. ... * Refactoring implementations of readHeader(LineReader) -> readActualHeader(LineIterator), including nullary implementations where applicable. * Galvanizing fo generic types. * Test fixups, mostly to pass around LineIterators instead of LineReaders. * New rev of tribble, which incorporates a fix that addresses a problem with TribbleIndexedFeatureReader reading a header twice in some instances. * New rev of sam, to make AbstractIterator visible (was moved from picard -> sam in Tribble API refactor).		2013-08-19 15:52:47 -04:00
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ActiveRegionUnitTest.java	Optimization for ActiveRegion.removeAll	2013-05-21 16:18:57 -04:00
ActivityProfileStateUnitTest.java	Updating licenses of latest moved files	2013-01-26 13:46:52 -05:00
ActivityProfileUnitTest.java	Create a new normalDistributionLog10 function that is unit tested for use in the VQSR.	2013-05-30 16:00:08 -04:00
BandPassActivityProfileUnitTest.java	Adaptations to accomodate Tribble API changes, comprising mostly of the following.	2013-08-19 15:52:47 -04:00