gatk3的最后一个经典版本3.8

Christopher Hartl 07e716d23a PickSequenomProbes2 expanded functionality: lowercasing based on sequence uniqueness, preserving reference base prior to indel (not a part of the VC as I thought it was), masking deletion bases with 'N's, flanking insertion with 'N's, output is a fasta formatted file. Renamed to ValidationAmplicons since this is really not for picking sequenom probes, but for generating amplicon sequence from which other applications (like sequenom) can choose PCR primers. Moved from private to public.		2011-07-19 15:21:47 -04:00
public	PickSequenomProbes2 expanded functionality: lowercasing based on sequence uniqueness, preserving reference base prior to indel (not a part of the VC as I thought it was), masking deletion bases with 'N's, flanking insertion with 'N's, output is a fasta formatted file. Renamed to ValidationAmplicons since this is really not for picking sequenom probes, but for generating amplicon sequence from which other applications (like sequenom) can choose PCR primers. Moved from private to public.	2011-07-19 15:21:47 -04:00
settings	Merged bug fix from Stable into Unstable, and resolved merge conflicts.	2011-07-08 15:50:31 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Now deletes the dump directory on ant clean	2011-07-12 08:50:58 -04:00
ivy.xml	Merged bug fix from Stable into Unstable, and resolved merge conflicts.	2011-07-08 15:50:31 -04:00