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contexts
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fixes for VariantAnnotations and second bases. Misc. removal of failing (and unstable) integration tests that require rereview
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2009-12-02 15:41:35 +00:00 |
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datasources
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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examples
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- Optimized implementation of -byReadGroup in DoCWalker
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2009-12-02 03:39:24 +00:00 |
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executive
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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filters
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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io
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Support for initialize() and onTraversalDone() output from parallelized walkers.
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2009-10-26 20:18:31 +00:00 |
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iterators
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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refdata
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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traversals
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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walkers
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Improved RankSum calculations and RankSum annotation. Much more meaningful
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2009-12-04 22:16:40 +00:00 |
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CommandLineExecutable.java
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Command-line arguments for SamReadFilters.
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2009-11-10 23:36:17 +00:00 |
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CommandLineGATK.java
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adding error log reporting to the GATK, and a stream based output method for the argument collection
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2009-10-28 19:56:05 +00:00 |
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GATKArgumentCollection.java
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Un-reinventing the wheel. --sleep argument removed.
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2009-12-02 20:19:28 +00:00 |
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GenomeAnalysisEngine.java
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Un-reinventing the wheel. --sleep argument removed.
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2009-12-02 20:19:28 +00:00 |
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Reads.java
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Command-line arguments for SamReadFilters.
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2009-11-10 23:36:17 +00:00 |
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WalkerManager.java
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Allow users to directly specify filters from the command-line, applicable to
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2009-11-10 18:40:16 +00:00 |
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package-info.java
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Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file
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2009-12-04 20:08:41 +00:00 |
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