Ami Levy-Moonshine 81eef3aa37 merge development branchs of log-less HMM and FastGatherer to master		2013-01-06 23:01:58 -05:00
..
engine	Bringing latest performance updates from the GATK to CMI	2012-12-05 21:40:03 -05:00
extensions	add few queue script and the CatVariantsGatherer scala class	2012-12-26 13:06:36 -05:00
function	Add walltime changes to LSF	2012-11-29 15:23:37 -05:00
library	Fix edge case for very small VCFs	2012-01-19 00:51:28 -05:00
util	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00
QCommandLine.scala	Removed default use of @Output syntax.	2012-11-29 13:40:36 -05:00
QCommandPlugin.scala	Scala classes were only returning direct subclasses (confirmed when inspected in debugger) so changed PluginManager to allow specifying the explicit subclass.	2012-11-14 10:33:20 -05:00
QException.scala	…
QScript.scala	Restored RemoteFile push and pull in base QScript.	2012-12-04 12:34:07 -05:00
QScriptManager.scala	Fixed package error and a few deprecated scala warnings.	2012-10-15 15:29:40 -04:00
QSettings.scala	Add walltime changes to LSF	2012-11-29 15:23:37 -05:00